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Microkeeper vs Xero Payroll: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both Microkeeper and Xero Payroll are leading payroll software solutions, but which one is better for you and your business?

Below we compare Microkeeper and Xero Payroll across nearly 50 different data points to help you make find the right one.

 

Microkeeper vs Xero Payroll Reviews

MicrokeeperXero Payroll
Trustpilot Rating3.64.3
Number of Trustpilot Reviews965747
iPhone App Rating4.44.7
Number of iPhone App Reviews11126300
Android App Rating04.3
Number of Android App Reviews07410

Microkeeper vs Xero Payroll Pricing

MicrokeeperXero Payroll
Free TrialYesYes
Free Trial Length1 month1 month
Cheapest Plan NamePayroll & STP onlyEarly
Cheapest Plan Cost Per Month$28$9.25
Mid Priced Plan NameStandardGrowing
Mid Priced Plan Cost Per Month$28$9.25
Top Plan NamePremiumEstablished
Top Plan Cost Per Month$150$17.5

Microkeeper vs Xero Payroll Features

FeaturesMicrokeeperXero Payroll
Target Business SizeEnterpriseSmall business
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✘✔
E-sign I-9 & W-4✘✘
Live Customer Support✘✔
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✘✔
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✔
Check Delivery✘✘
API✔✔

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

Xero Payroll Early Features

  • Send quotes and 20 invoices†
  • Enter 5 bills
  • Reconcile bank transactions
  • Capture bills and receipts with Hubdoc
  • Short-term cash flow and business snapshot
  • Payroll with Gusto (Optional)

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

Xero Payroll Established Features

  • Send invoices and quotes
  • Enter bills
  • Reconcile bank transactions
  • Capture bills and receipts with Hubdoc
  • Short-term cash flow and business snapshot
  • Bulk reconcile transactions
  • Use multiple currencies
  • Track projects
  • Claim expenses
  • Analytics Plus
  • Payroll with Gusto (Optional)

Microkeeper vs Xero Payroll Pro & Cons

MicrokeeperXero Payroll
Pros
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
  • User Friendly
  • User Interface
  • Integrations
  • Saves Time
  • Management
Cons
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless
  • Expensive
  • Not User Friendly
  • Expense Report Issues
  • Technical Issues
  • Room for Improvement

Other Payroll Software Comparisons

  • Xero Payroll vs Workday
  • EPAY Payroll vs Payfit
  • Gusto vs APS Payroll
  • SurePayroll vs Razorpay
  • Kashflow Payroll vs Push Payroll
  • Ready Pay by HR3 vs Workday
  • Oytser HR vs Superworks
  • SurePayroll vs Dayforce
  • APS Payroll vs Aruti
  • EPAY Payroll vs CloudPay

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