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Microkeeper vs EBS PaySuite: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: April 25, 2025

Both Microkeeper and EBS PaySuite are leading payroll software solutions, but which one is better for you and your business?

Below we compare Microkeeper and EBS PaySuite across nearly 50 different data points to help you make find the right one.

 

Microkeeper vs EBS PaySuite Reviews

MicrokeeperEBS PaySuite
Trustpilot Rating3.60
Number of Trustpilot Reviews960
iPhone App Rating4.40
Number of iPhone App Reviews1110
Android App Rating00
Number of Android App Reviews00

Microkeeper vs EBS PaySuite Pricing

MicrokeeperEBS PaySuite
Free TrialYesn/a
Free Trial Length1 monthn/a
Cheapest Plan NamePayroll & STP onlyn/a
Cheapest Plan Cost Per Month$28$n/a
Mid Priced Plan NameStandardn/a
Mid Priced Plan Cost Per Month$28$n/a
Top Plan NamePremiumn/a
Top Plan Cost Per Month$150$n/a

Microkeeper vs EBS PaySuite Features

FeaturesMicrokeeperEBS PaySuite
Target Business SizeEnterpriseMid size business
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✘✔
E-sign I-9 & W-4✘✘
Live Customer Support✘✘
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✘✘
Time Off Accrual✔✘
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✘
Check Delivery✘✔
API✔✘

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

EBS PaySuite n/a Features

n/a

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

EBS PaySuite n/a Features

n/a

Microkeeper vs EBS PaySuite Pro & Cons

MicrokeeperEBS PaySuite
Pros
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
  • All In One Place
  • Comprehensive Solution
  • Easy Processes
  • One Stop Shop
  • Reporting
Cons
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless
  • Integration Issues
  • Need Improvements
  • Technical Issues

Other Payroll Software Comparisons

  • Gloroots vs Sage
  • Keka vs PDS Vista Payroll
  • Remote vs SumoPayroll
  • CheckMark Payroll vs Kashflow Payroll
  • Excelforce vs Toast
  • Greenshades vs Everee Payroll
  • Payfit vs Keka
  • isolved vs Namely
  • Oytser HR vs APS Payroll
  • ADP vs QuickBooks Payroll

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