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Zenefits vs Microkeeper: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both Zenefits and Microkeeper are leading payroll software solutions, but which one is better for you and your business?

Below we compare Zenefits and Microkeeper across nearly 50 different data points to help you make find the right one.

 

Zenefits vs Microkeeper Reviews

ZenefitsMicrokeeper
Trustpilot Rating3.93.6
Number of Trustpilot Reviews17096
iPhone App Rating4.24.4
Number of iPhone App Reviews316111
Android App Rating4.40
Number of Android App Reviews11500

Zenefits vs Microkeeper Pricing

ZenefitsMicrokeeper
Free TrialYesYes
Free Trial Lengthn/a1 month
Cheapest Plan NameEssentialsPayroll & STP only
Cheapest Plan Cost Per Month$20$28
Mid Priced Plan NameGrowthStandard
Mid Priced Plan Cost Per Month$20$28
Top Plan NameZenPremium
Top Plan Cost Per Month$33$150

Zenefits vs Microkeeper Features

FeaturesZenefitsMicrokeeper
Target Business SizeMid size businessEnterprise
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✔✘
E-sign I-9 & W-4✔✘
Live Customer Support✘✘
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✔✘
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✔
Check Delivery✘✘
API✔✔

Zenefits Essentials Features

  • Automated Onboarding
  • Employee Management
  • Time Off Tracking
  • Scheduling
  • Integrations
  • Mobile App
  • Analytics Dashboards

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

Zenefits Zen Features

  • Automated Onboarding
  • Employee Management
  • Time Off Tracking
  • Scheduling
  • Integrations
  • Mobile App
  • Configurable People Analytics
  • Compensation Management
  • Performance Management
  • Employee Engagement Surveys
  • People Hub
  • Payroll

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

Zenefits vs Microkeeper Pro & Cons

ZenefitsMicrokeeper
Pros
  • User Interface
  • Pricing
  • All In One Place
  • Customer Service
  • User Friendly
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
Cons
  • Technical Issues
  • Customer Service
  • Integration Issues
  • Slow
  • Need Improvements
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless

Other Payroll Software Comparisons

  • Sage vs Push Payroll
  • greytHR vs Online Paystub Generator
  • Square Payroll vs Keka
  • CloudPay vs Namely
  • Payfit vs Workday
  • Zenefits vs Netchex
  • Excelforce vs Kashflow Payroll
  • isolved vs Namely
  • Fingercheck vs Razorpay
  • Gloroots vs CAVU HCM

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