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Wave vs Microkeeper: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: April 25, 2025

Both Wave and Microkeeper are leading payroll software solutions, but which one is better for you and your business?

Below we compare Wave and Microkeeper across nearly 50 different data points to help you make find the right one.

 

Wave vs Microkeeper Reviews

WaveMicrokeeper
Trustpilot Rating1.63.6
Number of Trustpilot Reviews12696
iPhone App Rating4.54.4
Number of iPhone App Reviews5700111
Android App Rating3.70
Number of Android App Reviews229000

Wave vs Microkeeper Pricing

WaveMicrokeeper
Free TrialYesYes
Free Trial Length1 month1 month
Cheapest Plan NameSelf service statesPayroll & STP only
Cheapest Plan Cost Per Month$n/a$28
Mid Priced Plan Namen/aStandard
Mid Priced Plan Cost Per Month$n/a$28
Top Plan NameTax service statesPremium
Top Plan Cost Per Month$40$150

Wave vs Microkeeper Features

FeaturesWaveMicrokeeper
Target Business SizeSmall businessEnterprise
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✔✘
E-sign I-9 & W-4✘✘
Live Customer Support✔✘
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✔✘
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✔
Check Delivery✘✘
API✘✔

Wave Self service states Features

  • Wave makes filing your own payroll taxes easy
  • 36 states are self-serve, which means you’ll have to pay and file the paperwork yourself. Wave makes it easy by showing you what information and how much money you’ll need per payroll.

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

Wave Tax service states Features

  • Wave handles your payroll taxes
  • 14 states include tax services with the option to automatically transfer tax payments and file the paperwork with your state tax office and the IRS (this excludes 1099 Filings).

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

Wave vs Microkeeper Pro & Cons

WaveMicrokeeper
Pros
  • User-Friendly Interface
  • Accurate Payroll Calculation
  • Free Service
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
Cons
  • Slow Performance
  • Poor Customer Service
  • Limited Payroll Features
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless

Other Payroll Software Comparisons

  • EBS PaySuite vs CAVU HCM
  • Greenshades vs Revelo
  • Multiplier vs Gloroots
  • CloudPay vs Dayforce
  • Xero Payroll vs UKG
  • SurePayroll vs Hourly
  • Fingercheck vs Aruti
  • Gusto vs ThePayStubs
  • Zenefits vs Gloroots
  • Heartland vs Payfit

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