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QuickBooks Payroll vs CheckMark Payroll: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: April 25, 2025

Both QuickBooks Payroll and CheckMark Payroll are leading payroll software solutions, but which one is better for you and your business?

Below we compare QuickBooks Payroll and CheckMark Payroll across nearly 50 different data points to help you make find the right one.

 

QuickBooks Payroll vs CheckMark Payroll Reviews

QuickBooks PayrollCheckMark Payroll
Trustpilot Rating1.13.5
Number of Trustpilot Reviews5510
iPhone App Rating4.6not available
Number of iPhone App Reviews110400not available
Android App Rating4.1not available
Number of Android App Reviews29900not available

QuickBooks Payroll vs CheckMark Payroll Pricing

QuickBooks PayrollCheckMark Payroll
Free TrialYesYes
Free Trial Length1 month2 months
Cheapest Plan NamePayroll Core + Simple StartCheckMark Payroll Pro
Cheapest Plan Cost Per Month$52.5$n/a
Mid Priced Plan NamePayroll Core + Essentialsn/a
Mid Priced Plan Cost Per Month$52.5$n/a
Top Plan NamePayroll Premium + PlusCheckMark Payroll Pro+
Top Plan Cost Per Month$85$619

QuickBooks Payroll vs CheckMark Payroll Features

FeaturesQuickBooks PayrollCheckMark Payroll
Target Business SizeMid size businessMid size business
Unlimited Payrolls✘✔
Automated Tax Filing & Payments✔✔
E-sign I-9 & W-4✘✘
Live Customer Support✔✔
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✔✔
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✔
Check Delivery✘✘
API✘✘

QuickBooks Payroll Payroll Core + Simple Start Features

  • Full-service payroll
  • Includes automated taxes & forms
  • Auto Payroll
  • 1099 E-File & Pay
  • Expert product support
  • Next-day direct deposit
  • 401(k) plans
  • Health benefits for your team
  • Workers’ comp administration
  • Track income & expenses
  • Capture & organize receipts
  • Maximize tax deductions
  • Invoice & accept payments
  • Track miles
  • Run general reports
  • Send estimates
  • Track sales & sales tax
  • Manage 1099 contractors
  • Connect 1 sales channel
  • Free guided setup

CheckMark Payroll CheckMark Payroll Pro Features

  • Self Service Payroll
  • Automatic Payroll Calculation
  • Unlimited Companies
  • Unlimited Salaried & Hourly Employees
  • Unlimited Payrolls (Regular, Bonus, Off-Cycle, etc.)
  • All Pay Frequencies
  • Multiple Pay Rates
  • MICR Encoded Check Printing
  • ACH Direct Deposit
  • Printing & E-Filing of Forms 941, 940, 944, 943, W-2, & W-3
  • Employer Payroll Tax Filings
  • Access to 40+ Types of Payroll Reports
  • Employee Benefits (Health, Retirement, Insurance, etc.)
  • Customized Vacation and Sick Leave Policies
  • Customized Deductions and Garnishments
  • Up to 90 mins within 12 months
  • Online access to program fixes

QuickBooks Payroll Payroll Premium + Plus Features

  • Full-service payroll
  • Includes automated taxes & forms
  • Auto Payroll
  • 1099 E-File & Pay
  • Expert product support
  • Same-day direct deposit
  • 24/7 expert product support
  • Expert review
  • Track time on the go
  • 401(k) plans
  • Health benefits for your team
  • Workers’ comp administration
  • HR support center
  • Track income & expenses
  • Capture & organize receipts
  • Maximize tax deductions
  • Invoice & accept payments
  • Track miles
  • Run comprehensive reports
  • Send estimates
  • Track sales & sales tax
  • Manage 1099 contractors
  • Connect all sales channels
  • Free guided setup
  • Manage bills
  • Enter time
  • Includes 5 users
  • Track project profitability
  • Track inventory

CheckMark Payroll CheckMark Payroll Pro+ Features

  • Self Service Payroll
  • Automatic Payroll Calculation
  • Unlimited Companies
  • Unlimited Salaried & Hourly Employees
  • Unlimited Payrolls (Regular, Bonus, Off-Cycle, etc.)
  • All Pay Frequencies
  • Multiple Pay Rates
  • MICR Encoded Check Printing
  • ACH Direct Deposit
  • Printing & E-Filing of Forms 941, 940, 944, 943, W-2, & W-3
  • Employer Payroll Tax Filings
  • Access to 40+ Types of Payroll Reports
  • Employee Benefits (Health, Retirement, Insurance, etc.)
  • Customized Vacation and Sick Leave Policies
  • Customized Deductions and Garnishments
  • Up to 300 mins of support within 12 months
  • Exclusive Pro+ toll-free phone number
  • Top-of-the-queue priority
  • Reduced data recovery rates
  • Online access to program fixes
  • Exclusive Pro+ Support Live Chat

QuickBooks Payroll vs CheckMark Payroll Pro & Cons

QuickBooks PayrollCheckMark Payroll
Pros
  • User Friendly
  • User Interface
  • Saves Time
  • Access Anywhere
  • Meets Business Needs
  • Direct deposit option
  • Easy to use and interfaces with CheckMark’s Accounting program, MultiLedger
  • Automated reports
Cons
  • Room for Improvement
  • Takes Time
  • Customer Service
  • Expensive
  • Desktop Issues
  • Technical support, glitches with Mac
  • High cost
  • More features like direct sms, email, other tax purpose forms

Other Payroll Software Comparisons

  • Square Payroll vs Netchex
  • Razorpay vs Darwinbox
  • Multiplier vs Microkeeper
  • Rippling vs Darwinbox
  • Revelo vs Wrapbook
  • Wagepoint vs Push Payroll
  • UKG vs WorkZoom
  • EPAY Payroll vs Kashflow Payroll
  • PrimePay vs CAVU HCM
  • Heartland vs Ready Pay by HR3

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