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Paychex vs Justworks: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both Paychex and Justworks are leading payroll software solutions, but which one is better for you and your business?

Below we compare Paychex and Justworks across nearly 50 different data points to help you make find the right one.

 

Paychex vs Justworks Reviews

PaychexJustworks
Trustpilot Rating1.24.3
Number of Trustpilot Reviews23313
iPhone App Rating4.84.3
Number of iPhone App Reviews411200132
Android App Rating3.84.1
Number of Android App Reviews2940038

Paychex vs Justworks Pricing

PaychexJustworks
Free Trialn/an/a
Free Trial Lengthn/an/a
Cheapest Plan NameEssentialsBasic
Cheapest Plan Cost Per Month$By request$n/a
Mid Priced Plan NameSelectn/a
Mid Priced Plan Cost Per Month$By request$n/a
Top Plan NameProPlus
Top Plan Cost Per Month$By request$99

Paychex vs Justworks Features

FeaturesPaychexJustworks
Target Business SizeEnterpriseMid size business
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✔✔
E-sign I-9 & W-4✘✔
Live Customer Support✘✔
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✘✔
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✔✘
Check Printing✔✘
Check Delivery✔✘
API✔✘

Paychex Essentials Features

  • Payroll Processing
  • Taxpay® Payroll Tax Administration with W-2/1099
  • Employee Pay Options
  • Garnishment Payment Service
  • Employee Self-Service and Mobile Experience
  • Financial Wellness and Cashflow Assistance
  • Employee Onboarding
  • HR Library
  • Analytics and Reports Center
  • New Hire Reporting
  • Labor Posters

Justworks Basic Features

  • Payroll for Salaried & Hourly Employees
  • Off-Cycle Payments
  • Vendor & Contractor Payments
  • Employer Payroll Tax Fillings
  • W-2 & 1099 Filings
  • Unemployment Insurance Filings
  • Employment Practices Liability Insurance
  • 24/7 Support
  • HR Consulting
  • Harassment Prevention & Inclusion Trainings
  • Online Employee Onboarding
  • PTO Management
  • Calendar, Doc Center, Directory
  • Accounting Software Integrations
  • Reporting
  • Commuter Benefits
  • Plan Setup
  • Mobile App for Employees
  • Expense Management Tool
  • Workers’ Comp (required)
  • Life & Disability Insurance
  • Health & Wellness Perks
  • Fitness Memberships
  • 401(k)
  • International Contractor Payments

Paychex Pro Features

  • Payroll Processing
  • Taxpay® Payroll Tax Administration with W-2/1099
  • Employee Pay Options
  • Garnishment Payment Service
  • General Ledger Service
  • Employee Self-Service and Mobile Experience
  • Financial Wellness and Cashflow Assistance
  • Learning Management System1
  • Employee Onboarding
  • HR Library
  • Employee Handbook Builder
  • Pre-Employment Screening
  • Analytics and Reports Center
  • New Hire Reporting
  • Labor Posters
  • State Unemployment Insurance Service
  • Workers’ Compensation Payment Service2 or Report Service
  • General Ledger Integrations

Justworks Plus Features

  • COBRA Administration
  • Health Advocacy Services
  • One Medical (where available)
  • Medical Insurance
  • Dental & Vision Insurance
  • HSA / FSA Accounts
  • Payroll for Salaried & Hourly Employees
  • Off-Cycle Payments
  • Vendor & Contractor Payments
  • Employer Payroll Tax Fillings
  • W-2 & 1099 Filings
  • Unemployment Insurance Filings
  • Employment Practices Liability Insurance
  • 24/7 Support
  • HR Consulting
  • Harassment Prevention & Inclusion Trainings
  • Online Employee Onboarding
  • PTO Management
  • Calendar, Doc Center, Directory
  • Accounting Software Integrations
  • Reporting
  • Commuter Benefits
  • Plan Setup
  • Mobile App for Employees
  • Expense Management Tool
  • Workers’ Comp (required)
  • Life & Disability Insurance
  • Health & Wellness Perks
  • Fitness Memberships
  • 401(k)
  • International Contractor Payments

Paychex vs Justworks Pro & Cons

PaychexJustworks
Pros
  • User Friendly
  • Saves Time
  • Customer Service
  • Reporting
  • Easy Processes
  • Customer Service
  • User Interface
  • Ideal for Small Businesses
  • User Friendly
  • Pricing
Cons
  • Not User Friendly
  • Technical Issues
  • Adjustment Issues
  • Slow
  • Customer Service
  • Need Improvements
  • Expensive
  • Integration Issues
  • Not User Friendly
  • Adjustment Issues

Other Payroll Software Comparisons

  • OnPay vs Paychex
  • Ready Pay by HR3 vs Revelo
  • Square Payroll vs Sage
  • Oytser HR vs Zenefits
  • Ready Pay by HR3 vs UKG
  • Toast vs Workday
  • Gusto vs APS Payroll
  • Paycom vs Ready Pay by HR3
  • Excelforce vs HRONE
  • QuickBooks Payroll vs SumoPayroll

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