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Papaya Global vs Microkeeper: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both Papaya Global and Microkeeper are leading payroll software solutions, but which one is better for you and your business?

Below we compare Papaya Global and Microkeeper across nearly 50 different data points to help you make find the right one.

 

Papaya Global vs Microkeeper Reviews

Papaya GlobalMicrokeeper
Trustpilot Rating2.63.6
Number of Trustpilot Reviews696
iPhone App Rating04.4
Number of iPhone App Reviews0111
Android App Rating00
Number of Android App Reviews00

Papaya Global vs Microkeeper Pricing

Papaya GlobalMicrokeeper
Free Trialn/aYes
Free Trial Lengthn/a1 month
Cheapest Plan NamePayroll Platform LicensePayroll & STP only
Cheapest Plan Cost Per Month$150$28
Mid Priced Plan NameData and Insights Platform LicenseStandard
Mid Priced Plan Cost Per Month$150$28
Top Plan NameEmployer of RecordPremium
Top Plan Cost Per Month$650$150

Papaya Global vs Microkeeper Features

FeaturesPapaya GlobalMicrokeeper
Target Business SizeEnterpriseEnterprise
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✔✘
E-sign I-9 & W-4✘✘
Live Customer Support✘✘
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✔✘
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✘✔
Check Delivery✘✘
API✔✔

Papaya Global Payroll Platform License Features

  • Upgrade your payroll and payments technology without replacing your payroll partners
  • No need to rip and replace your existing payroll network
  • Quickest “Go Live” on the market

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

Papaya Global Employer of Record Features

  • Hire top talent anywhere
  • Build local teams in weeks, not months
  • Test new markets – without payroll liability

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

Papaya Global vs Microkeeper Pro & Cons

Papaya GlobalMicrokeeper
Pros
  • Payment processing through Papaya Global is safe with GDPR and SOC Compliance and no third-party involvement.
  • High level of customization within the HRIS system.
  • Robust analytics for predictive analytics, financial forecasting and comprehensive insights.
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
Cons
  • Expensive compared to alternative PEO software solutions.
  • Papaya Global has an EOR aggregator model, meaning that it uses a network of ICPs, and does not own EOR subsidiaries or legal entities in the countries it services.
  • The solution lacks HR features commonly present in other PEO solutions, like performance monitoring and training management tools.
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless

Other Payroll Software Comparisons

  • Gusto vs Multiplier
  • Payfit vs Checkwriters
  • Gusto vs Wrapbook
  • Rippling vs Aruti
  • Xero Payroll vs Kashflow Payroll
  • greytHR vs Justworks
  • Everee Payroll vs Hourly
  • Everee Payroll vs UKG
  • Square Payroll vs Push Payroll
  • PrimePay vs Wave

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