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Microkeeper vs Paypro: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both Microkeeper and Paypro are leading payroll software solutions, but which one is better for you and your business?

Below we compare Microkeeper and Paypro across nearly 50 different data points to help you make find the right one.

 

Microkeeper vs Paypro Reviews

MicrokeeperPaypro
Trustpilot Rating3.60
Number of Trustpilot Reviews960
iPhone App Rating4.44.2
Number of iPhone App Reviews11112300
Android App Rating03.6
Number of Android App Reviews09510

Microkeeper vs Paypro Pricing

MicrokeeperPaypro
Free TrialYesn/a
Free Trial Length1 monthn/a
Cheapest Plan NamePayroll & STP onlyn/a
Cheapest Plan Cost Per Month$28$n/a
Mid Priced Plan NameStandardn/a
Mid Priced Plan Cost Per Month$28$n/a
Top Plan NamePremiumn/a
Top Plan Cost Per Month$150$n/a

Microkeeper vs Paypro Features

FeaturesMicrokeeperPaypro
Target Business SizeEnterpriseEnterprise
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✘✔
E-sign I-9 & W-4✘✔
Live Customer Support✘✘
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✘✔
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✔
Check Printing✔✔
Check Delivery✘✔
API✔✘

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

Paypro n/a Features

n/a

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

Paypro n/a Features

n/a

Microkeeper vs Paypro Pro & Cons

MicrokeeperPaypro
Pros
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
  • Customer Service
  • Comprehensive Solution
  • Ideal for Small Businesses
  • Reports
  • User Friendly
Cons
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless
  • Not User Friendly
  • Adjustment Issues
  • Slow
  • Room for Improvement
  • Need Improvements

Other Payroll Software Comparisons

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  • Oytser HR vs EBS PaySuite
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  • Paychex vs Wrapbook
  • eBacon vs Namely
  • Remote vs Inova Payroll
  • Roll by ADP vs Razorpay
  • Paylocity vs Push Payroll
  • Checkwriters vs Proliant

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