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APS Payroll vs CheckMark Payroll: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both APS Payroll and CheckMark Payroll are leading payroll software solutions, but which one is better for you and your business?

Below we compare APS Payroll and CheckMark Payroll across nearly 50 different data points to help you make find the right one.

 

APS Payroll vs CheckMark Payroll Reviews

APS PayrollCheckMark Payroll
Trustpilot Rating03.5
Number of Trustpilot Reviews00
iPhone App Rating4not available
Number of iPhone App Reviews135not available
Android App Rating3.8not available
Number of Android App Reviews357not available

APS Payroll vs CheckMark Payroll Pricing

APS PayrollCheckMark Payroll
Free Trialn/aYes
Free Trial Lengthn/a2 months
Cheapest Plan NamePayrollCheckMark Payroll Pro
Cheapest Plan Cost Per Month$By request$n/a
Mid Priced Plan NamePayroll + Attendancen/a
Mid Priced Plan Cost Per Month$By request$n/a
Top Plan NamePayroll + HR + AttendanceCheckMark Payroll Pro+
Top Plan Cost Per Month$By request$619

APS Payroll vs CheckMark Payroll Features

FeaturesAPS PayrollCheckMark Payroll
Target Business SizeMid size businessMid size business
Unlimited Payrolls✘✔
Automated Tax Filing & Payments✔✔
E-sign I-9 & W-4✘✘
Live Customer Support✔✔
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✘✔
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✔
Check Delivery✔✘
API✘✘

APS Payroll Payroll Features

  • Payroll Console
  • Guaranteed Tax Compliance – Federal and One State
  • Report Manager
  • Accrual Time Tracking
  • Employee Directory
  • Quarterly Tax Filings
  • New Hire Reporting
  • Direct Deposit and Paycards
  • General Ledger Reporting
  • Garnishment Processing
  • Multi-Account Management Center
  • Manager and Employee Self Service
  • Custom Report Builder
  • Custom Report Sharing
  • Existing Imports, Exports, and Integrations
  • Help Center
  • Unlimited Form W-2 Reprints Through APS
  • Unlimited Custom Fields
  • Payroll Batch Error Checking

CheckMark Payroll CheckMark Payroll Pro Features

  • Self Service Payroll
  • Automatic Payroll Calculation
  • Unlimited Companies
  • Unlimited Salaried & Hourly Employees
  • Unlimited Payrolls (Regular, Bonus, Off-Cycle, etc.)
  • All Pay Frequencies
  • Multiple Pay Rates
  • MICR Encoded Check Printing
  • ACH Direct Deposit
  • Printing & E-Filing of Forms 941, 940, 944, 943, W-2, & W-3
  • Employer Payroll Tax Filings
  • Access to 40+ Types of Payroll Reports
  • Employee Benefits (Health, Retirement, Insurance, etc.)
  • Customized Vacation and Sick Leave Policies
  • Customized Deductions and Garnishments
  • Up to 90 mins within 12 months
  • Online access to program fixes

APS Payroll Payroll + HR + Attendance Features

  • HR Console
  • Performance Management
  • Employee Notification Center – Newsfeed, Email, and Text
  • HR Support Center
  • Asset Tracking
  • Training Course Enrollment and Tracking
  • Total Compensation Reporting
  • Document Management with eSignatures
  • Data Integrity Validation
  • OSHA Tracking and Reporting
  • Event Tracking
  • EEO and VETS 100a Reporting

CheckMark Payroll CheckMark Payroll Pro+ Features

  • Self Service Payroll
  • Automatic Payroll Calculation
  • Unlimited Companies
  • Unlimited Salaried & Hourly Employees
  • Unlimited Payrolls (Regular, Bonus, Off-Cycle, etc.)
  • All Pay Frequencies
  • Multiple Pay Rates
  • MICR Encoded Check Printing
  • ACH Direct Deposit
  • Printing & E-Filing of Forms 941, 940, 944, 943, W-2, & W-3
  • Employer Payroll Tax Filings
  • Access to 40+ Types of Payroll Reports
  • Employee Benefits (Health, Retirement, Insurance, etc.)
  • Customized Vacation and Sick Leave Policies
  • Customized Deductions and Garnishments
  • Up to 300 mins of support within 12 months
  • Exclusive Pro+ toll-free phone number
  • Top-of-the-queue priority
  • Reduced data recovery rates
  • Online access to program fixes
  • Exclusive Pro+ Support Live Chat

APS Payroll vs CheckMark Payroll Pro & Cons

APS PayrollCheckMark Payroll
Pros
  • Customer Service
  • User Friendly
  • Easy Processes
  • Reporting
  • User Interface
  • Direct deposit option
  • Easy to use and interfaces with CheckMark’s Accounting program, MultiLedger
  • Automated reports
Cons
  • Reporting Issues
  • Technical Issues
  • Need Improvements
  • Not User Friendly
  • Adjustment Issues
  • Technical support, glitches with Mac
  • High cost
  • More features like direct sms, email, other tax purpose forms

Other Payroll Software Comparisons

  • CheckMark Payroll vs Namely
  • Paylocity vs Zelt
  • Arbonum vs Trolley
  • Square Payroll vs greytHR
  • SumoPayroll vs Trolley
  • PayCaptain vs Proliant
  • Roll by ADP vs Excelforce
  • PrimePay vs PDS Vista Payroll
  • ThePayStubs vs Netchex
  • Namely vs Kashflow Payroll

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