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Zenefits vs CheckMark Payroll: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both Zenefits and CheckMark Payroll are leading payroll software solutions, but which one is better for you and your business?

Below we compare Zenefits and CheckMark Payroll across nearly 50 different data points to help you make find the right one.

 

Zenefits vs CheckMark Payroll Reviews

ZenefitsCheckMark Payroll
Trustpilot Rating3.93.5
Number of Trustpilot Reviews1700
iPhone App Rating4.2not available
Number of iPhone App Reviews316not available
Android App Rating4.4not available
Number of Android App Reviews1150not available

Zenefits vs CheckMark Payroll Pricing

ZenefitsCheckMark Payroll
Free TrialYesYes
Free Trial Lengthn/a2 months
Cheapest Plan NameEssentialsCheckMark Payroll Pro
Cheapest Plan Cost Per Month$20$n/a
Mid Priced Plan NameGrowthn/a
Mid Priced Plan Cost Per Month$20$n/a
Top Plan NameZenCheckMark Payroll Pro+
Top Plan Cost Per Month$33$619

Zenefits vs CheckMark Payroll Features

FeaturesZenefitsCheckMark Payroll
Target Business SizeMid size businessMid size business
Unlimited Payrolls✘✔
Automated Tax Filing & Payments✔✔
E-sign I-9 & W-4✔✘
Live Customer Support✘✔
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✔✔
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✔
Check Delivery✘✘
API✔✘

Zenefits Essentials Features

  • Automated Onboarding
  • Employee Management
  • Time Off Tracking
  • Scheduling
  • Integrations
  • Mobile App
  • Analytics Dashboards

CheckMark Payroll CheckMark Payroll Pro Features

  • Self Service Payroll
  • Automatic Payroll Calculation
  • Unlimited Companies
  • Unlimited Salaried & Hourly Employees
  • Unlimited Payrolls (Regular, Bonus, Off-Cycle, etc.)
  • All Pay Frequencies
  • Multiple Pay Rates
  • MICR Encoded Check Printing
  • ACH Direct Deposit
  • Printing & E-Filing of Forms 941, 940, 944, 943, W-2, & W-3
  • Employer Payroll Tax Filings
  • Access to 40+ Types of Payroll Reports
  • Employee Benefits (Health, Retirement, Insurance, etc.)
  • Customized Vacation and Sick Leave Policies
  • Customized Deductions and Garnishments
  • Up to 90 mins within 12 months
  • Online access to program fixes

Zenefits Zen Features

  • Automated Onboarding
  • Employee Management
  • Time Off Tracking
  • Scheduling
  • Integrations
  • Mobile App
  • Configurable People Analytics
  • Compensation Management
  • Performance Management
  • Employee Engagement Surveys
  • People Hub
  • Payroll

CheckMark Payroll CheckMark Payroll Pro+ Features

  • Self Service Payroll
  • Automatic Payroll Calculation
  • Unlimited Companies
  • Unlimited Salaried & Hourly Employees
  • Unlimited Payrolls (Regular, Bonus, Off-Cycle, etc.)
  • All Pay Frequencies
  • Multiple Pay Rates
  • MICR Encoded Check Printing
  • ACH Direct Deposit
  • Printing & E-Filing of Forms 941, 940, 944, 943, W-2, & W-3
  • Employer Payroll Tax Filings
  • Access to 40+ Types of Payroll Reports
  • Employee Benefits (Health, Retirement, Insurance, etc.)
  • Customized Vacation and Sick Leave Policies
  • Customized Deductions and Garnishments
  • Up to 300 mins of support within 12 months
  • Exclusive Pro+ toll-free phone number
  • Top-of-the-queue priority
  • Reduced data recovery rates
  • Online access to program fixes
  • Exclusive Pro+ Support Live Chat

Zenefits vs CheckMark Payroll Pro & Cons

ZenefitsCheckMark Payroll
Pros
  • User Interface
  • Pricing
  • All In One Place
  • Customer Service
  • User Friendly
  • Direct deposit option
  • Easy to use and interfaces with CheckMark’s Accounting program, MultiLedger
  • Automated reports
Cons
  • Technical Issues
  • Customer Service
  • Integration Issues
  • Slow
  • Need Improvements
  • Technical support, glitches with Mac
  • High cost
  • More features like direct sms, email, other tax purpose forms

Other Payroll Software Comparisons

  • eBacon vs Namely
  • Keka vs Superworks
  • Deel vs Square Payroll
  • Zenefits vs Wrapbook
  • EPAY Payroll vs Toast
  • Heartland vs Keka
  • Remote vs Plane
  • Heartland vs Paypro
  • APS Payroll vs WorkZoom
  • Gusto vs Square Payroll

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