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OnPay vs Microkeeper: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both OnPay and Microkeeper are leading payroll software solutions, but which one is better for you and your business?

Below we compare OnPay and Microkeeper across nearly 50 different data points to help you make find the right one.

 

OnPay vs Microkeeper Reviews

OnPayMicrokeeper
Trustpilot Rating4.13.6
Number of Trustpilot Reviews22096
iPhone App Rating1.84.4
Number of iPhone App Reviews26111
Android App Ratingnot available0
Number of Android App Reviewsnot available0

OnPay vs Microkeeper Pricing

OnPayMicrokeeper
Free TrialYesYes
Free Trial Length1 month1 month
Cheapest Plan Namen/aPayroll & STP only
Cheapest Plan Cost Per Month$n/a$28
Mid Priced Plan Namen/aStandard
Mid Priced Plan Cost Per Month$n/a$28
Top Plan Namen/aPremium
Top Plan Cost Per Month$n/a$150

OnPay vs Microkeeper Features

FeaturesOnPayMicrokeeper
Target Business SizeMid size businessEnterprise
Unlimited Payrolls✔✘
Automated Tax Filing & Payments✔✘
E-sign I-9 & W-4✔✘
Live Customer Support✔✘
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✘✘
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✔
Check Delivery✔✘
API✘✔

OnPay n/a Features

  • Unlimited monthly pay runs
  • Automated tax payments and filings
  • Free W-2 and 1099 processing
  • HR tools and software integrations
  • Expert support whenever you need it

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

OnPay n/a Features

n/a

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

OnPay vs Microkeeper Pro & Cons

OnPayMicrokeeper
Pros
  • Customer Service
  • User Interface
  • User Friendly
  • Pricing
  • Saves Time
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
Cons
  • Not User Friendly
  • Need Improvements
  • Slow
  • Customer Service
  • Room for Improvement
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless

Other Payroll Software Comparisons

  • Paymate vs Revelo
  • APS Payroll vs Checkwriters
  • Fingercheck vs CAVU HCM
  • Multiplier vs Fingercheck
  • Excelforce vs Push Payroll
  • ADP vs isolved
  • PrimePay vs TriNet
  • Revelo vs CAVU HCM
  • Remote vs Payfit
  • Heartland vs QuickBooks Payroll

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