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Microkeeper vs PayCaptain: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: April 25, 2025

Both Microkeeper and PayCaptain are leading payroll software solutions, but which one is better for you and your business?

Below we compare Microkeeper and PayCaptain across nearly 50 different data points to help you make find the right one.

 

Microkeeper vs PayCaptain Reviews

MicrokeeperPayCaptain
Trustpilot Rating3.64.4
Number of Trustpilot Reviews9612
iPhone App Rating4.44.8
Number of iPhone App Reviews11112
Android App Rating00
Number of Android App Reviews00

Microkeeper vs PayCaptain Pricing

MicrokeeperPayCaptain
Free TrialYesn/a
Free Trial Length1 monthn/a
Cheapest Plan NamePayroll & STP onlyBasic
Cheapest Plan Cost Per Month$28$199
Mid Priced Plan NameStandardGrowth
Mid Priced Plan Cost Per Month$28$199
Top Plan NamePremiumEnterprise
Top Plan Cost Per Month$150$399

Microkeeper vs PayCaptain Features

FeaturesMicrokeeperPayCaptain
Target Business SizeEnterpriseEnterprise
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✘✘
E-sign I-9 & W-4✘✘
Live Customer Support✘✘
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✘
Expense Reimbursement✘✘
Time Off Accrual✔✘
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✘
Check Delivery✘✘
API✔✔

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

PayCaptain Basic Features

  • All analytics features
  • Up to 250,000 tracked visits
  • Normal support
  • Mobile app
  • Up to 3 team members

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

PayCaptain Enterprise Features

  • Everything on Growth plan
  • Up to 5,000,000 tracked visits
  • Dedicated support
  • Mobile app
  • Up to 50 team members

Microkeeper vs PayCaptain Pro & Cons

MicrokeeperPayCaptain
Pros
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
  • The built-in features of on-demand pay and digital wallets
  • App interface is modern, simple and engaging
  • The integration process was simple and straightforward
Cons
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless
  • Accessibility to past employees P45’s
  • UX improvement in terms of how it looks
  • Email notifications of new payslips

Other Payroll Software Comparisons

  • Patriot Software vs Namely
  • Greenshades vs Aruti
  • Checkwriters vs Keka
  • Payfit vs Sage
  • SurePayroll vs Checkwriters
  • Payfit vs Xero Payroll
  • OnPay vs Darwinbox
  • ADP vs Hourly
  • Trolley vs Darwinbox
  • Fingercheck vs Wrapbook

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