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Microkeeper vs Justworks: Which Payroll Software Is Better?


Disclosure: We may earn commissions if you shop through the links below.

Last Updated: May 22, 2025

Both Microkeeper and Justworks are leading payroll software solutions, but which one is better for you and your business?

Below we compare Microkeeper and Justworks across nearly 50 different data points to help you make find the right one.

 

Microkeeper vs Justworks Reviews

MicrokeeperJustworks
Trustpilot Rating3.64.3
Number of Trustpilot Reviews9613
iPhone App Rating4.44.3
Number of iPhone App Reviews111132
Android App Rating04.1
Number of Android App Reviews038

Microkeeper vs Justworks Pricing

MicrokeeperJustworks
Free TrialYesn/a
Free Trial Length1 monthn/a
Cheapest Plan NamePayroll & STP onlyBasic
Cheapest Plan Cost Per Month$28$n/a
Mid Priced Plan NameStandardn/a
Mid Priced Plan Cost Per Month$28$n/a
Top Plan NamePremiumPlus
Top Plan Cost Per Month$150$99

Microkeeper vs Justworks Features

FeaturesMicrokeeperJustworks
Target Business SizeEnterpriseMid size business
Unlimited Payrolls✘✘
Automated Tax Filing & Payments✘✔
E-sign I-9 & W-4✘✔
Live Customer Support✘✔
Third-Party Integrations✔✔
Ability To Manage Employee Benefits✔✔
Employee Access To Platform✔✔
Direct Deposit✔✔
Expense Reimbursement✘✔
Time Off Accrual✔✔
Pre-Tax Deductions✔✔
Wage Garnishment✔✔
Background Checks✘✘
Check Printing✔✘
Check Delivery✘✘
API✔✘

Microkeeper Payroll & STP only Features

  • Payroll Processing
  • Leave
  • Public Holidays
  • Super Calculations
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • 9-5 Email Support
  • 9-5 Phone Support

Justworks Basic Features

  • Payroll for Salaried & Hourly Employees
  • Off-Cycle Payments
  • Vendor & Contractor Payments
  • Employer Payroll Tax Fillings
  • W-2 & 1099 Filings
  • Unemployment Insurance Filings
  • Employment Practices Liability Insurance
  • 24/7 Support
  • HR Consulting
  • Harassment Prevention & Inclusion Trainings
  • Online Employee Onboarding
  • PTO Management
  • Calendar, Doc Center, Directory
  • Accounting Software Integrations
  • Reporting
  • Commuter Benefits
  • Plan Setup
  • Mobile App for Employees
  • Expense Management Tool
  • Workers’ Comp (required)
  • Life & Disability Insurance
  • Health & Wellness Perks
  • Fitness Memberships
  • 401(k)
  • International Contractor Payments

Microkeeper Premium Features

  • Payroll Processing
  • Leave
  • Automated Award Application
  • Public Holidays
  • Super Calculations
  • SMS Rosters
  • iCal, Google Calendar, Outlook Export
  • Push Notifications
  • Print Export
  • Roster Confirmation
  • AutoRoster (Automated Shift Sheduling)
  • Shift bidding
  • Facial Recognition
  • Fingerprint Clocking
  • NFC Tag Clocking
  • GPS Clocking On Smart Device
  • Timesheet Tick Approval
  • Timesheet vs Roster Comparison
  • Employee Self Service Console
  • Paperless Employee Onboarding
  • Internal Messaging
  • Employee File Storage
  • Skills Matrix
  • Custom Reports
  • Native Xero Integration
  • MYOB / Sage / … Integration
  • Single Touch Payroll Compliance
  • Super Clearing House
  • 9-5 Email Support
  • 9-5 Phone Support

Justworks Plus Features

  • COBRA Administration
  • Health Advocacy Services
  • One Medical (where available)
  • Medical Insurance
  • Dental & Vision Insurance
  • HSA / FSA Accounts
  • Payroll for Salaried & Hourly Employees
  • Off-Cycle Payments
  • Vendor & Contractor Payments
  • Employer Payroll Tax Fillings
  • W-2 & 1099 Filings
  • Unemployment Insurance Filings
  • Employment Practices Liability Insurance
  • 24/7 Support
  • HR Consulting
  • Harassment Prevention & Inclusion Trainings
  • Online Employee Onboarding
  • PTO Management
  • Calendar, Doc Center, Directory
  • Accounting Software Integrations
  • Reporting
  • Commuter Benefits
  • Plan Setup
  • Mobile App for Employees
  • Expense Management Tool
  • Workers’ Comp (required)
  • Life & Disability Insurance
  • Health & Wellness Perks
  • Fitness Memberships
  • 401(k)
  • International Contractor Payments

Microkeeper vs Justworks Pro & Cons

MicrokeeperJustworks
Pros
  • 100% Australia Focused
  • Good UX
  • Great tech support
  • Budget-friendly (only for payroll only and standard packages)
  • Updates and information about governmental requirements
  • All-in-one solution
  • Customer Service
  • User Interface
  • Ideal for Small Businesses
  • User Friendly
  • Pricing
Cons
  • Reporting could use significant improvement
  • Integration with platforms such as MYOB isn’t seamless and is prone to error
  • Limited employee dashboard
  • Pricey premium package that only seems to be targeting big businesses
  • Starter plan is pretty useless
  • Need Improvements
  • Expensive
  • Integration Issues
  • Not User Friendly
  • Adjustment Issues

Other Payroll Software Comparisons

  • Papaya Global vs QuickBooks Payroll
  • Wagepoint vs Paypro
  • OnPay vs Roll by ADP
  • Patriot Software vs Justworks
  • Paycom vs PayCaptain
  • PDS Vista Payroll vs Hourly
  • CloudPay vs Netchex
  • Justworks vs PayCaptain
  • Roll by ADP vs TriNet
  • Hourly vs EBS PaySuite

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